Classes
Top level classes.
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Primary class for working with SFS data to infer demography \(\eta(t)\equiv 2N(t)\), or with \(k\)-SFS data to infer demography and mutation spectrum history \(\boldsymbol\mu(t)\). |
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Demographic history \(\eta(t)\). |
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Mutation spectrum history (MuSH) \(\boldsymbol\mu(t)\). |
Submodules
Submodules that the main classes rely on, and may be of interest to some users
Optimization algorithms. |
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History objects for representing demography \(\eta(t)\) and MuSH \(\boldsymbol\mu(t)\). |
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Loss functions for measuring goodness of fit. |
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Utility functions. |
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Functions for compositional data analysis. |