mushi.utils

Utility functions.

Functions

C	The combinatorial matrix \(\mathbf C\) defined in the paper's appendix.
M	The matrix \(\mathbf M\) defined in the paper's appendix
fold	transform SFS to folded SFS.
misid_partners	Ancestral state misidentification partner indices.
mutype_misid	mutation type misidentification operator.
revcomp	Reverse complement of nucleotide sequence.
tmrca_sf	The survival function of the TMRCA at each time point.