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mushi
»
Index
Index
A
|
C
|
D
|
E
|
F
|
H
|
I
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
X
|
Y
|
Z
A
AccProxGrad (class in mushi.optimization)
ancom() (in module mushi.composition)
arrays() (eta method)
,
[1]
(History method)
(mu method)
,
[1]
as_df() (kSFS method)
C
C() (in module mushi.utils)
centralize() (in module mushi.composition)
check_grid() (eta method)
,
[1]
(History method)
(mu method)
,
[1]
clear_eta() (kSFS method)
clear_mu() (kSFS method)
closure() (in module mushi.composition)
clr() (in module mushi.composition)
clr_inv() (in module mushi.composition)
clustermap() (kSFS method)
(mu method)
,
[1]
D
dkl() (in module mushi.loss_functions)
E
epochs() (eta method)
,
[1]
(History method)
(mu method)
,
[1]
eta (class in mushi)
(class in mushi.histories)
(kSFS attribute)
(kSFS property)
F
f() (AccProxGrad method)
(LineSearcher method)
(Optimizer method)
(ThreeOpProxGrad method)
(TrendFilter method)
fold() (in module mushi.utils)
H
History (class in mushi.histories)
I
ilr() (in module mushi.composition)
ilr_inv() (in module mushi.composition)
infer_eta() (kSFS method)
infer_misid() (kSFS method)
infer_mush() (kSFS method)
inner() (in module mushi.composition)
K
kSFS (class in mushi)
L
LineSearcher (class in mushi.optimization)
loss() (kSFS method)
lsq() (in module mushi.loss_functions)
M
M() (in module mushi.utils)
misid_partners() (in module mushi.utils)
module
mushi.composition
mushi.histories
mushi.loss_functions
mushi.optimization
mushi.utils
mu (class in mushi)
(class in mushi.histories)
(kSFS attribute)
(kSFS property)
multiplicative_replacement() (in module mushi.composition)
mushi.composition
module
mushi.histories
module
mushi.loss_functions
module
mushi.optimization
module
mushi.utils
module
mutation_types (kSFS attribute)
mutype_misid() (in module mushi.utils)
N
n (kSFS attribute)
O
Optimizer (class in mushi.optimization)
P
perturb() (in module mushi.composition)
perturb_inv() (in module mushi.composition)
plot() (eta method)
,
[1]
(History method)
(kSFS method)
(mu method)
,
[1]
plot_cumulative() (mu method)
,
[1]
plot_total() (kSFS method)
power() (in module mushi.composition)
prf() (in module mushi.loss_functions)
R
revcomp() (in module mushi.utils)
run() (AccProxGrad method)
(LineSearcher method)
(Optimizer method)
(ThreeOpProxGrad method)
(TrendFilter method)
S
set_eta() (kSFS method)
simulate() (kSFS method)
T
ThreeOpProxGrad (class in mushi.optimization)
tmrca_cdf() (kSFS method)
tmrca_sf() (in module mushi.utils)
TrendFilter (class in mushi.optimization)
X
X (kSFS attribute)
x (Optimizer attribute)
Y
y (eta property)
,
[1]
Z
Z (mu property)
,
[1]